miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|161913415|gb|DB886941.1|DB886941 ATGTGGTCAAAGCTTGTGGCTTTTTTCGTTAAAGTTTTTTTTTTTTCTAGTGTTTCACAACAACCTAATCCTTGCTTCGG
TTATTTGTGTTGATTTGTGTTTCTAGGGTTTTTGAGGCTATGAGAAGAGGATACTTCTTTTTCTGAGGTGGAGACAATGA
TTTTAACAAAGCAATATCGTTGTATACACTCCTCGAGTTGTCAATGCACAAAAGGGCATCTAAGTGAAGATGTGATTTTT
TTAGTATTTCAACAGCTGAACTGGAACCCTAAGTTCATTGCTACTTTGTCCTGCGTATGCAAATGGTTTGATGATCTTGC
CAAGCGAGTGTTATGGAAAGAGTTTTGCCGAACAAGGGCTCCAAAGATGATGCTTGATCTGCAATCTAGTGGAAGTCACA
GTGTTGATGGGAATTGGAGGGCACTTGGGAAACTGCTTATTTACTGTTCAGGATGTACAAAGGGTGGCCTGTTCAATAAC
ATTAACATCCCTGGTCATTTTGTTTATAGGACTCGGTTTTCTAGGACTTCTGGGAAGAGCTTTCTTTTGCCACAATGCAG
GACAGATGTATTATACGTGTCTGATCCCTGTGAACATCTTGACCAGG




Most similar to sp|Q9LF38|EDL1_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LF38|EDL1_ARATH EID1-like F-box protein 1 OS=Arabidopsis
           thaliana GN=EDL1 PE=2 SV=1
          Length = 293

 Score =  278 bits (711), Expect = 2e-74
 Identities = 126/151 (83%), Positives = 136/151 (90%), Gaps = 1/151 (0%)
 Frame = +1

Query: 157 MILTKQYRCIHSSSCQCTKGHLSEDVIFLVFQQLNWNPKFIATLSCVCKWFDDLAKRVLW 336
           MIL KQY C HS SCQCTKGHL+EDV+ LVFQ LNWNPK +ATLSCVC+WFDD AKRVLW
Sbjct: 1   MILPKQYCCTHSPSCQCTKGHLNEDVLLLVFQHLNWNPKLVATLSCVCRWFDDFAKRVLW 60

Query: 337 KEFCRTRAPKMMLDLQSSGSHSVDGNWRALGKLLIYCSGCTKGGLFN-NINIPGHFVYRT 513
           KEFC+TRAPKMMLDLQSSGSH +DGNWRALGKLLIYCSGCT+GGLFN ++ IPGHFVYRT
Sbjct: 61  KEFCKTRAPKMMLDLQSSGSHCIDGNWRALGKLLIYCSGCTQGGLFNSSVQIPGHFVYRT 120

Query: 514 RFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQ 606
           RFSRT G+S L PQCRTDVLYV DPCEHLDQ
Sbjct: 121 RFSRTLGRSLLPPQCRTDVLYVCDPCEHLDQ 151